#JUICER 3 UPGRADE SOFTWARE#

The minimum software requirement to run Juicer is a working Java installation Juicer currently works with the following resource management software: Juicer requires the use of a cluster, with ideally >= 4 cores (min 1 core) JuicerД¬onsists of two parts: the pipeline that creates Hi-C files from raw data,ДЄnd the post-processing command line tools. Juicer is a pipeline optimized for parallel computation on a cluster. CPU - scripts for running pipeline and postprocessing on a single CPU BETA LSF - scripts for running pipeline and postprocessing on LSF BETA SLURM - scripts for running pipeline and postprocessing on SLURM UGER - scripts for running pipeline and postprocessing on UGER (Univa) AWS - scripts for running pipeline and postprocessing on AWS Univa Grid Engine, SLURM, and a single CPU In this repository, we include the scripts for running Juicer on AWS, LSF, Questions?ДЇor FAQs, or for asking new questions, please see our forum: /forum.html. Please see the wiki for extensive documentation. 'Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments.' Cell Systems 3(1), 2016.

Hesitate to contact us ( you use Juicer in your research, please cite: If you have further difficulties using Juicer, please do not Juicer is currently in its beta release, Juicer version 1.6. In thisДistribution, we include the pipeline for generating Hi-C maps from fastq rawДata files and command line tools for feature annotation on the Hi-C maps.

Juicer is a platform for analyzing kilobase resolution Hi-C data.

Juicer 3 upgrade